References
Allaire, JJ, Yihui Xie, Jonathan McPherson, Javier Luraschi, Kevin Ushey, Aron Atkins, Hadley Wickham, Joe Cheng, Winston Chang, and Richard Iannone. 2022. Rmarkdown: Dynamic Documents for R. https://CRAN.R-project.org/package=rmarkdown.
Almende B.V. and Contributors, Benoit Thieurmel, and Titouan Robert. 2021. VisNetwork: Network Visualization Using Vis.js Library. http://datastorm-open.github.io/visNetwork/.
Arnold, Jeffrey B. 2021. Ggthemes: Extra Themes, Scales and Geoms for Ggplot2. https://github.com/jrnold/ggthemes.
Avgar, Tal, Subhash R. Lele, Jonah L. Keim, and Mark S. Boyce. 2017. “Relative Selection Strength: Quantifying Effect Size in Habitat- and Step-Selection Inference.” Ecology and Evolution 7 (14): 5322–30. https://doi.org/10.1002/ece3.3122.
Bivand, Roger S., Edzer Pebesma, and Virgilio Gomez-Rubio. 2013. Applied Spatial Data Analysis with R, Second Edition. Springer, NY. https://asdar-book.org/.
Bjørneraas, Kari, Bram Van Moorter, Christer Moe Rolandsen, and Ivar Herfindal. 2010. “Screening Global Positioning System Location Data for Errors Using Animal Movement Characteristics.” The Journal of Wildlife Management 74 (6): 1361–6.
Boyce, Mark S, Pierre R Vernier, Scott E Nielsen, and Fiona KA Schmiegelow. 2002. “Evaluating Resource Selection Functions.” Ecological Modelling 157 (2-3): 281–300.
Brentnall, Adam R, Jack Cuzick, John Field, and Stephen W Duffy. 2015. “A Concordance Index for Matched Case–Control Studies with Applications in Cancer Risk.” Statistics in Medicine 34 (3): 396–405.
Brooks, Mollie, Ben Bolker, Kasper Kristensen, Martin Maechler, Arni Magnusson, Hans Skaug, Anders Nielsen, Casper Berg, and Koen van Bentham. 2022. GlmmTMB: Generalized Linear Mixed Models Using Template Model Builder. https://github.com/glmmTMB/glmmTMB.
Brooks, Mollie E., Kasper Kristensen, Koen J. van Benthem, Arni Magnusson, Casper W. Berg, Anders Nielsen, Hans J. Skaug, Martin Maechler, and Benjamin M. Bolker. 2017. “glmmTMB Balances Speed and Flexibility Among Packages for Zero-Inflated Generalized Linear Mixed Modeling.” The R Journal 9 (2): 378–400. https://journal.r-project.org/archive/2017/RJ-2017-066/index.html.
Bryan, Jennifer, and Hadley Wickham. 2021. Gh: GitHub ’Api’. https://CRAN.R-project.org/package=gh.
Ching, Travers. 2022. Qs: Quick Serialization of R Objects. https://github.com/traversc/qs.
Csárdi, Gábor, and Linus Torvalds. 2022. Parsedate: Recognize and Parse Dates in Various Formats, Including All Iso 8601 Formats. https://github.com/gaborcsardi/parsedate.
Dickie, Melanie, Scott R McNay, Glenn D Sutherland, Michael Cody, and Tal Avgar. 2020. “Corridors or Risk? Movement Along, and Use of, Linear Features Varies Predictably Among Large Mammal Predator and Prey Species.” Journal of Animal Ecology 89 (2): 623–34.
Dowle, Matt, and Arun Srinivasan. 2022. Data.table: Extension of ‘Data.frame‘.
Fieberg, John, and Douglas H Johnson. 2015. “MMI: Multimodel Inference or Models with Management Implications?” The Journal of Wildlife Management 79 (5): 708–18.
Fieberg, John R, James D Forester, Garrett M Street, Douglas H Johnson, Althea A ArchMiller, and Jason Matthiopoulos. 2018. “Used-Habitat Calibration Plots: A New Procedure for Validating Species Distribution, Resource Selection, and Step-Selection Models.” Ecography 41 (5): 737–52.
Fieberg, John, Johannes Signer, Brian Smith, and Tal Avgar. 2021. “A ‘How to’guide for Interpreting Parameters in Habitat-Selection Analyses.” Journal of Animal Ecology 90 (5): 1027–43.
Fleming, Chris H, Justin M Calabrese, Thomas Mueller, Kirk A Olson, Peter Leimgruber, and William F Fagan. 2014. “From Fine-Scale Foraging to Home Ranges: A Semivariance Approach to Identifying Movement Modes Across Spatiotemporal Scales.” The American Naturalist 183 (5): E154–E167.
Fortin, Daniel, Marie-Eve Fortin, Hawthorne L Beyer, Thierry Duchesne, Sabrina Courant, and Karine Dancose. 2009. “Group-Size-Mediated Habitat Selection and Group Fusion–Fission Dynamics of Bison Under Predation Risk.” Ecology 90 (9): 2480–90.
Hijmans, Robert J. 2022. Raster: Geographic Data Analysis and Modeling. https://rspatial.org/raster.
Landau, William Michael. 2021a. Tarchetypes: Archetypes for Targets.
———. 2021b. “The Targets R Package: A Dynamic Make-Like Function-Oriented Pipeline Toolkit for Reproducibility and High-Performance Computing.” Journal of Open Source Software 6 (57): 2959. https://doi.org/10.21105/joss.02959.
———. 2022a. Tarchetypes: Archetypes for Targets. https://CRAN.R-project.org/package=tarchetypes.
———. 2022b. Targets: Dynamic Function-Oriented Make-Like Declarative Workflows. https://CRAN.R-project.org/package=targets.
Muff, Stefanie, Johannes Signer, and John Fieberg. 2020. “Accounting for Individual-Specific Variation in Habitat-Selection Studies: Efficient Estimation of Mixed-Effects Models Using Bayesian or Frequentist Computation.” Journal of Animal Ecology 89 (1): 80–92.
Northrup, Joseph M, Charles R Anderson Jr, Mevin B Hooten, and George Wittemyer. 2016. “Movement Reveals Scale Dependence in Habitat Selection of a Large Ungulate.” Ecological Applications 26 (8): 2746–57.
Northrup, Joseph M, Mevin B Hooten, Charles R Anderson Jr, and George Wittemyer. 2013. “Practical Guidance on Characterizing Availability in Resource Selection Functions Under a Use–Availability Design.” Ecology 94 (7): 1456–63.
Northrup, Joseph M, Eric Vander Wal, Maegwin Bonar, John Fieberg, Michel P Laforge, Martin Leclerc, Christina M Prokopenko, and Brian D Gerber. 2022. “Conceptual and Methodological Advances in Habitat-Selection Modeling: Guidelines for Ecology and Evolution.” Ecological Applications 32 (1): e02470.
Pebesma, Edzer. 2018. “Simple Features for R: Standardized Support for Spatial Vector Data.” The R Journal 10 (1): 439–46. https://doi.org/10.32614/RJ-2018-009.
———. 2022. Sf: Simple Features for R. https://CRAN.R-project.org/package=sf.
Pebesma, Edzer, and Roger Bivand. 2021. Sp: Classes and Methods for Spatial Data. https://CRAN.R-project.org/package=sp.
Pebesma, Edzer J., and Roger S. Bivand. 2005. “Classes and Methods for Spatial Data in R.” R News 5 (2): 9–13. https://CRAN.R-project.org/doc/Rnews/.
Prokopenko, Christina M., Mark S. Boyce, and Tal Avgar. 2016. “Characterizing Wildlife Behavioural Responses to Roads Using Integrated Step Selection Analysis.” Edited by Ayesha Tulloch. Journal of Applied Ecology 54 (2): 470–79. https://doi.org/10.1111/1365-2664.12768.
Prokopenko, Christina M, Mark S Boyce, and Tal Avgar. 2017. “Extent-Dependent Habitat Selection in a Migratory Large Herbivore: Road Avoidance Across Scales.” Landscape Ecology 32 (2): 313–25.
R Core Team. 2022. R: A Language and Environment for Statistical Computing. Vienna, Austria: R Foundation for Statistical Computing. https://www.R-project.org/.
Robitaille, Alec L. 2021. Distanceto: Calculate Distance to Features. https://CRAN.R-project.org/package=distanceto.
Scrafford, Matthew A, Tal Avgar, Rick Heeres, and Mark S Boyce. 2018. “Roads Elicit Negative Movement and Habitat-Selection Responses by Wolverines (Gulo Gulo Luscus).” Behavioral Ecology 29 (3): 534–42.
Signer, Johannes. 2022. Amt: Animal Movement Tools. https://github.com/jmsigner/amt.
Signer, Johannes, John Fieberg, and Tal Avgar. 2019a. “Animal Movement Tools (Amt): R Package for Managing Tracking Data and Conducting Habitat Selection Analyses.” Ecology and Evolution 9 (2): 880–90.
———. 2019b. “Animal Movement Tools (Amt): R Package for Managing Tracking Data and Conducting Habitat Selection Analyses.” Ecology and Evolution 9: 880–90. https://doi.org/10.1002/ece3.4823.
Ushey, Kevin. 2022. Renv: Project Environments. https://rstudio.github.io/renv/.
Wickham, Hadley. 2016. Ggplot2: Elegant Graphics for Data Analysis. Springer-Verlag New York. https://ggplot2.tidyverse.org.
———. 2021a. Conflicted: An Alternative Conflict Resolution Strategy. https://CRAN.R-project.org/package=conflicted.
———. 2021b. Downlit: Syntax Highlighting and Automatic Linking. https://CRAN.R-project.org/package=downlit.
Wickham, Hadley, Winston Chang, Lionel Henry, Thomas Lin Pedersen, Kohske Takahashi, Claus Wilke, Kara Woo, Hiroaki Yutani, and Dewey Dunnington. 2021. Ggplot2: Create Elegant Data Visualisations Using the Grammar of Graphics. https://CRAN.R-project.org/package=ggplot2.
Wickham, Hadley, Jim Hester, and Jeroen Ooms. 2021. Xml2: Parse Xml. https://CRAN.R-project.org/package=xml2.
Xie, Yihui. 2014. “Knitr: A Comprehensive Tool for Reproducible Research in R.” In Implementing Reproducible Computational Research, edited by Victoria Stodden, Friedrich Leisch, and Roger D. Peng. Chapman; Hall/CRC. http://www.crcpress.com/product/isbn/9781466561595.
———. 2015a. Dynamic Documents with R and Knitr. 2nd ed. Boca Raton, Florida: Chapman; Hall/CRC. http://yihui.org/knitr/.
———. 2015b. Dynamic Documents with R and Knitr. 2nd ed. Boca Raton, Florida: Chapman; Hall/CRC. https://yihui.org/knitr/.
———. 2016. Bookdown: Authoring Books and Technical Documents with R Markdown. Boca Raton, Florida: Chapman; Hall/CRC. https://bookdown.org/yihui/bookdown.
———. 2022a. Bookdown: Authoring Books and Technical Documents with R Markdown.
———. 2022b. Knitr: A General-Purpose Package for Dynamic Report Generation in R. https://yihui.org/knitr/.
Xie, Yihui, J. J. Allaire, and Garrett Grolemund. 2018. R Markdown: The Definitive Guide. Boca Raton, Florida: Chapman; Hall/CRC. https://bookdown.org/yihui/rmarkdown.
Xie, Yihui, Christophe Dervieux, and Emily Riederer. 2020. R Markdown Cookbook. Boca Raton, Florida: Chapman; Hall/CRC. https://bookdown.org/yihui/rmarkdown-cookbook.